Publications


Blanton, J. M., Peoples, L. M., Gerringer, M. E., Iacuaniello, C. M., Gallo, N. D., Linley, T. D., Jamieson, A. J., Drazen, J. C., Bartlett, D. H., & Allen, E. E. (2022). Microbiomes of Hadal Fishes across Trench Habitats Contain Similar Taxa and Known Piezophiles. MSphere, 7(2), e00032-22. https://doi.org/10.1128/msphere.00032-22
Zhang, W. J., Zhang, C., Zhou, S. Y., Li, X. G., Mangenot, S., Fouteau, S., Guerin, T., Qi, X. Q., Yang, J., Bartlett, D. H., & Wu, L. F. (2021). Comparative genomic analysis of obligately piezophilic Moritella yayanosii DB21MT-5 reveals bacterial adaptation to the Challenger Deep, Mariana Trench. Microbial Genomics, 7(7), 15. https://doi.org/10.1099/mgen.0.000591
Klempay, B., Arandia-Gorostidi, N., Dekas, A. E., Bartlett, D. H., Carr, C. E., Doran, P. T., Dutta, A., Erazo, N., Fisher, L. A., Glass, J. B., Pontefract, A., Som, S. M., Wilson, J. M., Schmidt, B. E., & Bowman, J. S. (2021). Microbial diversity and activity in Southern California salterns and bitterns: analogues for remnant ocean worlds. Environmental Microbiology. https://doi.org/10.1111/1462-2920.15440
Fisher, L. A., Pontefract, A., Som, S. M., Carr, C. E., Klempay, B., Schmidt, B. E., Bowman, J. S., & Bartlett, D. H. (2021). Current state of athalassohaline deep-sea hypersaline anoxic basin research-recommendations for future work and relevance to astrobiology. Environmental Microbiology. https://doi.org/10.1111/1462-2920.15414
Schauberger, C., Middelboe, M., Larsen, M., Peoples, L. M., Bartlett, D. H., Kirpekar, F., Rowden, A. A., Wenzhofer, F., Thamdrup, B., & Glud, R. N. (2021). Spatial variability of prokaryotic and viral abundances in the Kermadec and Atacama Trench regions. Limnology and Oceanography. https://doi.org/10.1002/lno.11711
Wang, H., Zhang, Y., Bartlett, D. H., & Xiao, X. (2020). Transcriptomic analysis reveals common adaptation mechanisms under different stresses for moderately piezophilic bacteria. Microbial Ecology. https://doi.org/10.1007/s00248-020-01609-3
Peoples, L. M., Kyaw, T. S., Ugalde, J. A., Mullane, K. K., Chastain, R. A., Yayanos, A. A., Kusube, M., Methe, B. A., & Bartlett, D. H. (2020). Distinctive gene and protein characteristics of extremely piezophilic Colwellia. Bmc Genomics, 21(1). https://doi.org/10.1186/s12864-020-07102-y
Hand, K. P., Bartlett, D. H., Fryer, P., Peoples, L., Williford, K., Hofmann, A. E., & Cameron, J. (2020). Discovery of novel structures at 10.7 km depth in the Mariana Trench may reveal chemolithoautotrophic microbial communities. Deep-Sea Research Part I-Oceanographic Research Papers, 160. https://doi.org/10.1016/j.dsr.2020.103238
Klasek, S., Torres, M. E., Bartlett, D. H., Tyler, M., Hong, W. L., & Colwell, F. (2019). Microbial communities from Arctic marine sediments respond slowly to methane addition during ex situ enrichments. Environmental Microbiology. https://doi.org/10.1111/1462-2920.14895
Dutta, A., Peoples, L. M., Gupta, A., Bartlett, D. H., & Sar, P. (2019). Exploring the piezotolerant/piezophilic microbial community and genomic basis of piezotolerance within the deep subsurface Deccan traps. Extremophiles, 23(4), 421–433. https://doi.org/10.1007/s00792-019-01094-8
Peoples, L. M., Grammatopoulou, E., Pombrol, M., Xu, X. X., Osuntokun, O., Blanton, J., Allen, E. E., Nunnally, C. C., Drazen, J. C., Mayor, D. J., & Bartlett, D. H. (2019). Microbial community diversity within sediments from two geographically separated hadal trenches. Frontiers in Microbiology, 10. https://doi.org/10.3389/fmicb.2019.00347
Peoples, L. M., Norenberg, M., Pric, D., McGoldrick, M., Novotny, M., Bochdansky, A., & Bartlett, D. H. (2019). A full-ocean-depth rated modular lander and pressure-retaining sampler capable of collecting hadal-endemic microbes under in situ conditions. Deep-Sea Research Part I-Oceanographic Research Papers, 143, 50–57. https://doi.org/10.1016/j.dsr.2018.11.010
Zhang, W. P., Watanabe, H. K., Ding, W., Lan, Y., Tian, R. M., Sun, J., Chen, C., Cai, L., Li, Y. X., Oguri, K., Toyofuku, T., Kitazato, H., Drazen, J. C., Bartlett, D., & Qian, P. Y. (2019). Gut microbial divergence between two populations of the hadal amphipod Hirondellea gigas. Applied and Environmental Microbiology, 85(1). https://doi.org/10.1128/aem.02032-18
Tian, J. W., Fan, L., Liu, H. D., Liu, J. W., Li, Y., Qin, Q. L., Gong, Z., Chen, H. T., Sun, Z. B., Zou, L., Wang, X. C., Xu, H. Z., Bartlett, D., Wang, M., Zhang, Y. Z., Zhang, X. H., & Zhang, C. L. L. (2018). A nearly uniform distributional pattern of heterotrophic bacteria in the Mariana Trench interior. Deep-Sea Research Part I-Oceanographic Research Papers, 142, 116–126. https://doi.org/10.1016/j.dsr.2018.10.002
Zhang, W. P., Tian, R. M., Sun, J., Bougouffa, S., Ding, W., Cai, L., Lan, Y., Tong, H. Y., Li, Y. X., Jamieson, A. J., Bajic, V. B., Drazen, J. C., Bartlett, D., & Qian, P. Y. (2018). Genome Reduction in Psychromonas Species within the Gut of an Amphipod from the Ocean’s Deepest Point. MSystems, 3(3). https://doi.org/10.1128/mSystems.00009-18
Marietou, A., Chastain, R., Beulig, F., Scoma, A., Hazen, T. C., & Bartlett, D. H. (2018). The effect of hydrostatic pressure on enrichments of hydrocarbon degrading microbes from the Gulf of Mexico following the Deepwater Horizon Oil Spill. Frontiers in Microbiology, 9. https://doi.org/10.3389/fmicb.2018.00808
Peoples, L. M., Donaldson, S., Osuntokun, O., Xia, Q., Nelson, A., Blanton, J., Allen, E. E., Church, M. J., & Bartlett, D. H. (2018). Vertically distinct microbial communities in the Mariana and Kermadec trenches. PLOS ONE, 13(4). https://doi.org/10.1371/journal.pone.0195102
Lan, Y., Sun, J., Tian, R. M., Bartlett, D. H., Li, R. S., Wong, Y. H., Zhang, W. P., Qiu, J. W., Xu, T., He, L. S., Tabata, H. G., & Qian, P. Y. (2017). Molecular adaptation in the world’s deepest-living animal: Insights from transcriptome sequencing of the hadal amphipod Hirondellea gigas. Molecular Ecology, 26(14), 3732–3743. https://doi.org/10.1111/mec.14149
Leon-Zayas, R., Peoples, L., Biddle, J. F., Podell, S., Novotny, M., Cameron, J., Lasken, R. S., & Bartlett, D. H. (2017). The metabolic potential of the single cell genomes obtained from the Challenger Deep, Mariana Trench within the candidate superphylum Parcubacteria (OD1). Environmental Microbiology, 19(7), 2769–2784. https://doi.org/10.1111/1462-2920.13789
Lan, Y., Sun, J., Bartlett, D. H., Rouse, G. W., Tabata, H. G., & Qian, P. Y. (2017). The deepest mitochondrial genome sequenced from Mariana Trench Hirondellea gigas (Amphipoda). Mitochondrial DNA Part B-Resources, 1, 802–803. https://doi.org/10.1080/23802359.2016.1214549
Yang, Y., Xu, G. P., Liang, J. D., He, Y., Xiong, L., Li, H., Bartlett, D., Deng, Z. X., Wang, Z. J., & Xiao, X. (2017). DNA backbone sulfur-modification expands microbial growth range under multiple stresses by its antioxidation function. Scientific Reports, 7. https://doi.org/10.1038/s41598-017-02445-1
Kusube, M., Kyaw, T. S., Tanikawa, K., Chastain, R. A., Hardy, K. M., Cameron, J., & Bartlett, D. H. (2017). Colwellia marinimaniae sp nov., a hyperpiezophilic species isolated from an amphipod within the Challenger Deep, Mariana Trench. International Journal of Systematic and Evolutionary Microbiology, 67(4), 824–831. https://doi.org/10.1099/ijsem.0.001671
Tarn, J., Peoples, L. M., Hardy, K., Cameron, J., & Bartlett, D. H. (2016). Identification of free-living and particle-associated microbial communities present in hadal regions of the Mariana Trench. Frontiers in Microbiology, 7. https://doi.org/10.3389/fmicb.2016.00665
Huang, Q., Tran, K. N., Rodgers, J. M., Bartlett, D. H., Hemley, R. J., & Ichiye, T. (2016). A molecular perspective on the limits of life: Enzymes under pressure. Condensed Matter Physics, 19(2). https://doi.org/10.5488/cmp.19.22801
Leon-Zayas, R., Novotny, M., Podell, S., Shepard, C. M., Berkenpas, E., Nikolenko, S., Pevzner, P., Lasken, R. S., & Bartlett, D. H. (2015). Single cells within the Puerto Rico Trench suggest hadal adaptation of microbial lineages. Applied and Environmental Microbiology, 81(24), 8265–8276. https://doi.org/10.1128/aem.01659-15
Zhang, Y., Li, X. G., Bartlett, D. H., & Xiao, X. (2015). Current developments in marine microbiology: high-pressure biotechnology and the genetic engineering of piezophiles. Current Opinion in Biotechnology, 33, 157–164. https://doi.org/10.1016/j.copbio.2015.02.013
Gallo, N. D., Cameron, J., Hardy, K., Fryer, P., Bartlett, D. H., & Levin, L. A. (2015). Submersible- and lander-observed community patterns in the Mariana and New Britain trenches: Influence of productivity and depth on epibenthic and scavenging communities. Deep-Sea Research Part I-Oceanographic Research Papers, 99, 119–133. https://doi.org/10.1016/j.dsr.2014.12.012
Marietou, A., Nguyen, A. T. T., Allen, E. E., & Bartlett, D. H. (2015). Adaptive laboratory evolution of Escherichia coil K-12 MG1655 for growth at high hydrostatic pressure. Frontiers in Microbiology, 5. https://doi.org/10.3389/fmicb.2014.00749
Marietou, A., & Bartlett, D. H. (2014). Effects of high hydrostatic pressure on coastal bacterial community abundance and diversity. Applied and Environmental Microbiology, 80(19), 5992–6003. https://doi.org/10.1128/aem.02109-14
Lauro, F. M., Eloe-Fadrosh, E. A., Richter, T. K. S., Vitulo, N., Ferriera, S., Johnson, J. H., & Bartlett, D. H. (2014). Ecotype diversity and conversion in photobacterium profundum strains. PLOS ONE, 9(5). https://doi.org/10.1371/journal.pone.0096953
Fang, J. S., Li, C., Zhang, L., Davis, T., Kato, C., & Bartlett, D. H. (2014). Hydrogen isotope fractionation in lipid biosynthesis by the piezophilic bacterium Moritella japonica DSK1. Chemical Geology, 367, 34–38. https://doi.org/10.1016/j.chemgeo.2013.12.018
Cao, Y., Chastain, R. A., Eloe, E. A., Nogi, Y., Kato, C., & Bartlett, D. H. (2014). Novel Psychropiezophilic oceanospirillales species Profundimonas piezophila gen. nov., sp nov., isolated from the deep-sea environment of the Puerto Rico Trench. Applied and Environmental Microbiology, 80(1), 54–60. https://doi.org/10.1128/aem.02288-13
Davydov, D. R., Sineva, E. V., Davydova, N. Y., Bartlett, D. H., & Halpert, J. R. (2013). CYP261 enzymes from deep sea bacteria: A clue to conformational heterogeneity in cytochromes P450. Biotechnology and Applied Biochemistry, 60(1), 30–40. https://doi.org/10.1002/bab.1083
Meersman, F., Daniel, I., Bartlett, D. H., Winter, R., Hazael, R., & McMillan, P. F. (2013). High-Pressure Biochemistry and Biophysics. In R. M. Hazen, A. P. Jones, & J. A. Baross (Eds.), Carbon in Earth (Vol. 75, pp. 607–648). Mineralogical Soc Amer.
Lucas, S., Han, J., Lapidus, A., Cheng, J. F., Goodwin, L. A., Pitluck, S., Peters, L., Mikhailova, N., Teshima, H., Detter, J. C., Han, C., Tapia, R., Land, M., Hauser, L., Kyrpides, N. C., Ivanova, N., Pagani, I., Vannier, P., Oger, P., … Jebbar, M. (2012). Complete Genome Sequence of the Thermophilic, Piezophilic, Heterotrophic Bacterium Marinitoga piezophila KA3. Journal of Bacteriology, 194(21), 5974–5975. https://doi.org/10.1128/JB.01430-12
Campanaro, S., De Pascale, F., Telatin, A., Schiavon, R., Bartlett, D. H., & Valle, G. (2012). The transcriptional landscape of the deep-sea bacterium Photobacterium profundum in both a toxR mutant and its parental strain. Bmc Genomics, 13. https://doi.org/10.1186/1471-2164-13-567
Oger, P., Sokolova, T. G., Kozhevnikova, D. A., Chernyh, N. A., Bartlett, D. H., Bonch-Osmolovskaya, E. A., & Lebedinsky, A. V. (2011). Complete genome sequence of the hyperthermophilic archaeon Thermococcus sp strain AM4, capable of organotrophic growth and growth at the expense of hydrogenogenic or sulfidogenic oxidation of carbon monoxide. Journal of Bacteriology, 193(24), 7019–7020. https://doi.org/10.1128/jb.06259-11
Eloe, E. A., Malfatti, F., Gutierrez, J., Hardy, K., Schmidt, W. E., Pogliano, K., Pogliano, J., Azam, F., & Bartlett, D. H. (2011). Isolation and characterization of a psychropiezophilic alphaproteobacterium. Applied and Environmental Microbiology, 77(22), 8145–8153. https://doi.org/10.1128/aem.05204-11
Eloe, E. A., Shulse, C. N., Fadrosh, D. W., Williamson, S. J., Allen, E. E., & Bartlett, D. H. (2011). Compositional differences in particle-associated and free-living microbial assemblages from an extreme deep-ocean environment. Environmental Microbiology Reports, 3(4), 449–458. https://doi.org/10.1111/j.1758-2229.2010.00223.x
Eloe, E. A., Fadrosh, D. W., Novotny, M., Allen, L. Z., Kim, M., Lombardo, M. J., Yee-Greenbaum, J., Yooseph, S., Allen, E. E., Lasken, R., Williamson, S. J., & Bartlett, D. H. (2011). Going deeper: Metagenome of a hadopelagic microbial community. PLOS ONE, 6(5). https://doi.org/10.1371/journal.pone.0020388
Phillips, R. S., Ghaffari, R., Dinh, P., Lima, S., & Bartlett, D. (2011). Properties of tryptophan indole-lyase from a piezophilic bacterium, Photobacterium profundum SS9. Archives of Biochemistry and Biophysics, 506(1), 35–41. https://doi.org/10.1016/j.abb.2010.11.002
Nagata, T., Tamburini, C., Aristegui, J., Baltar, F., Bochdansky, A. B., Fonda-Umani, S., Fukuda, H., Gogou, A., Hansell, D. A., Hansman, R. L., Herndl, G. J., Panagiotopoulos, C., Reinthaler, T., Sohrin, R., Verdugo, P., Yamada, N., Yamashita, Y., Yokokawa, T., & Bartlett, D. H. (2010). Emerging concepts on microbial processes in the bathypelagic ocean - ecology, biogeochemistry, and genomics. Deep-Sea Research Part Ii-Topical Studies in Oceanography, 57(16), 1519–1536. https://doi.org/10.1016/j.dsr2.2010.02.019
Yoshioka, H., Maruyama, A., Nakamura, T., Higashi, Y., Fuse, H., Sakata, S., & Bartlett, D. H. (2010). Activities and distribution of methanogenic and methane-oxidizing microbes in marine sediments from the Cascadia Margin. Geobiology, 8(3), 223–233. https://doi.org/10.1111/j.1472-4669.2009.00231.x
Purdy, A. E., Balch, D., Lizarraga-Partida, M. L., Islam, M. S., Martinez-Urtaza, J., Huq, A., Colwell, R. R., & Bartlett, D. H. (2010). Diversity and distribution of cholix toxin, a novel ADP-ribosylating factor from Vibrio cholerae. Environmental Microbiology Reports, 2(1), 198–207. https://doi.org/10.1111/j.1758-2229.2010.00139.x
Bartlett, D. H. (2010). Introduction to High-Pressure Bioscience and Biotechnology. In D. H. Bartlett (Ed.), High-Pressure Bioscience and Biotechnology (Vol. 1189, pp. 1–5). Blackwell Publishing.
Bartlett, D. H. (2010). High-pressure bioscience and biotechnology (Vol. 1189). Blackwell Pub. on behalf of the New York Academy of Sciences.
Bartlett, D. H., & Kerman, I. (2010). Contributions of large-scale DNA sequencing efforts to the understanding of low temperature piezophiles. In K. Horikoshi, G. Antranikian, A. Bull, F. Robb, & K. Stetter (Eds.), Extremophiles handbook (p. 32). Ybp E-Solutions.
El-Hajj, Z. W., Allcock, D., Tryfona, T., Lauro, F. M., Sawyer, L., Bartlett, D. H., & Ferguson, G. P. (2010). Insights into piezophily from genetic studies on the deep-sea bacterium, Photobacterium profundum SS9. In D. H. Bartlett (Ed.), High-Pressure Bioscience and Biotechnology (Vol. 1189, pp. 143–148). Blackwell Publishing.
El-Hajj, Z. W., Tryfona, T., Allcock, D. J., Hasan, F., Lauro, F. M., Sawyer, L., Bartlett, D. H., & Ferguson, G. P. (2009). Importance of Proteins Controlling Initiation of DNA Replication in the Growth of the High-Pressure-Loving Bacterium Photobacterium profundum SS9. Journal of Bacteriology, 191(20), 6383–6393. https://doi.org/10.1128/jb.00576-09
Lowery, C. A., Park, J., Gloeckner, C., Meijler, M. M., Mueller, R. S., Boshoff, H. I., Ulrich, R. L., Barry, C. E., Bartlett, D. H., Kravchenko, V. V., Kaufmann, G. F., & Janda, K. D. (2009). Defining the Mode of Action of Tetramic Acid Antibacterials Derived from Pseudomonas aeruginosa Quorum Sensing Signals. Journal of the American Chemical Society, 131(40), 14473–14479. https://doi.org/10.1021/ja9056079